Bioconductor Time series

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2.2k

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deseq2 time series time course

updated 3.8 years ago by Michael Love 42k • written 3.8 years ago by bsierieb ▴ 10

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699

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scRNA-seq time series

4.0 years ago Bogdan ▴ 670

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892

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deseq2 rnaseq repeated measures time series design formula

updated 4.4 years ago by Michael Love 42k • written 4.5 years ago by Dorien ▴ 10

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906

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transcriptomics gene expression time series plant biology circadian Job

4.7 years ago dezer ▴ 10

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1.6k

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limma microarray time series DEG paired

updated 4.8 years ago by Gordon Smyth 51k • written 4.8 years ago by kawess • 0

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2.1k

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deseq2 Time Series Gene Clustering LRT ATACseq

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by kaiser.karim • 0

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1.4k

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deseq2 time series remove batch effect

5.4 years ago Nicola • 0

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3.3k

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limma design model.matrix time series splines

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by tleona3 • 0

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1.0k

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limma time series help

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by rm1238 • 0

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1.3k

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deseq2 time series multiple factor design

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by Jane • 0

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1.9k

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rna-seq time series patient limma-voom

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by aec ▴ 90

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3.3k

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deseq2 ruvseq spike-in time course time series

updated 6.6 years ago by davide risso ▴ 950 • written 6.6 years ago by staceyborrego ▴ 20

12 results • Page 1 of 1

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Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730

You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…

Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0

Thank you all, I solved my issue by creating a for loop. Cheers!

Comment: Ranking the GSEA Results by alserg ▴ 270

Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself

Comment: Ranking the GSEA Results by alserg ▴ 270

Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…

Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k

As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…

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Comment: Ranking the GSEA Results

Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)

ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features

Comment: How to get the DMR?

Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it

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Popular Question to mohammedtoufiq91 ▴ 10